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Author:

Dong, Chunli (Dong, Chunli.) | Dang, Ling (Dang, Ling.) | Gao, Xiaocui (Gao, Xiaocui.) | Xu, Renyan (Xu, Renyan.) | Zhang, Hui (Zhang, Hui.) | Zhang, Xin (Zhang, Xin.)

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Abstract:

As a widely distributed RNA methylation modification, m5C is involved in the regulation of tumorigenesis. Nevertheless, its fundamental process is not clear. This research sought to examine the genetic properties of the 5-methylcytosine (m5C) regulator in endometrial carcinoma, as well as the prognostic significance and impact of m5C regulators on oxidative stress. Therefore, the TCGA-UCEC data set was used to explore the characteristics of 17 RNAm5C-related genes in the transcriptome, genome, and regulatory network. The subtypes of RNAm5C in UCEC were identified based on the expression levels of 17 RNAm5C-related genes. The prognosis of RNAm5C-2 was significantly better than that of RNAm5C-1. Then, we examined the differences (variations) across various subtypes in terms of immune cell infiltration (ICI) as well as the expression of immune-related signal markers. The findings demonstrated that there were distinct variations in the infiltration level of immune cells in each subtype, which may be the reason for the differences in the prognosis of each subtype. In addition, the differentially expressed genes (DEGs) among RNAm5C subtypes of different UCEC tumors were identified, and the DEGs significant for survival were screened. After obtaining 34 prognostic genes, the dimensionality was reduced to construct an RNA methylation score (RS). As per the findings, RS is a more accurate marker for determining the prognosis for patients with endometrial cancer. The RS was used to categorize UCEC tumor samples, and these results led to the formation of high-score and low-score groups. The patients in the group with a high-RNA methylation score exhibited a survival time that was considerably longer in contrast with those in the group with a low-RNA methylation score. The capacity of RS to predict whether or not immunotherapy would be beneficial was explored further. In the group with a high-RNA methylation score, the objective response rate to the anti-PD-L1 therapy was substantially greater compared to that observed in the subgroup with a low-RNA methylation score. Additionally, there were variations across various RS groups in terms of clinical features, tumor mutation burden, and the infiltration level of immune cells. After binary tree analysis and PCR verification of 34 prognostic genes, it is finally found that the six genes of MAGOH3P, TRBJ2_3, YTHDF1P1, RP11_323D18.5, RP11_405M12.2, and ADAM30 are significantly overexpressed in cancer tissues. These genes can be used as potential biomarkers of endometrial cancer and provide data support for precise immunotherapy in UCEC tumors. © 2022 Chunli Dong et al.

Keyword:

Alkylation Binary trees Cytology Diagnosis Diseases Gene expression Methylation Polymerase chain reaction RNA Tumors

Author Community:

  • [ 1 ] [Dong, Chunli]Department of Anesthesiology and Operation, The Second Affiliated Hospital of xi'An Jiaotong University, China
  • [ 2 ] [Dang, Ling]Department of Obstetrics and Gynecology, The Second Affiliated Hospital of xi'An Jiaotong University, China
  • [ 3 ] [Gao, Xiaocui]Department of Obstetrics and Gynecology, The Second Affiliated Hospital of xi'An Jiaotong University, China
  • [ 4 ] [Xu, Renyan]Department of Anesthesiology and Operation, The Second Affiliated Hospital of xi'An Jiaotong University, China
  • [ 5 ] [Zhang, Hui]Department of Anesthesiology and Operation, The Second Affiliated Hospital of xi'An Jiaotong University, China
  • [ 6 ] [Zhang, Xin]Department of Obstetrics and Gynecology, The Second Affiliated Hospital of xi'An Jiaotong University, China

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Source :

Oxidative Medicine and Cellular Longevity

ISSN: 1942-0900

Year: 2022

Volume: 2022

6 . 5 4 3

JCR@2020

ESI Discipline: MOLECULAR BIOLOGY & GENETICS;

ESI HC Threshold:8

Cited Count:

WoS CC Cited Count:

SCOPUS Cited Count: 1

ESI Highly Cited Papers on the List: 0 Unfold All

WanFang Cited Count:

Chinese Cited Count:

30 Days PV: 6

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